PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C001991P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family M-type_MADS
Protein Properties Length: 365aa    MW: 41107.5 Da    PI: 5.3008
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C001991P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.5e-211053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + e++  rqvt+skRrngi+KKA EL +LCd+++ +++fs++gk
  MELO3C001991P1 10 KLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGK 53
                    5688999***********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.376161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-18323IPR002100Transcription factor, MADS-box
PfamPF003197.2E-201254IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGRVKLKIKK LESTGSRQVT YSKRRNGIMK KARELAILCD IDIVLLMFSP SGKPALYEGE  60
RSNIEEVITK FAELTPQERS KRKMESLEVL KKTFKKLDHD VNIDDFVGSS SQDFEQELTN  120
EVAILRDQIG EAHKRLSYWR NPDSINSIEQ LQTMEDLVRE SLNQTRLHKE NLRRHQLLSQ  180
DFTGQYPSAG MSLPLLMDEM QGTQPLLWLP NYGSQQIPLP NEPCFLQPSD VECSFPSYPS  240
FFNPGKQIEA GISGQIDSMP QGDGALNELS GTSCSTLQLG DQYPYPTCDG SNFQDEKRLK  300
IEMEMNLHAA CVDTQLNGKL ELSRSLYGDD QHPWASIPGP CSIPMYQSNE YHHVGSLLTG  360
PSKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S1e-14192190Myocyte-specific enhancer factor 2B
1tqe_R1e-14192190Myocyte-specific enhancer factor 2B
1tqe_Q1e-14192190Myocyte-specific enhancer factor 2B
1tqe_P1e-14192190Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443475.10.0PREDICTED: MADS-box transcription factor 55 isoform X1
SwissprotQ7X9I04e-92AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A0A0LVJ50.0A0A0A0LVJ5_CUCSA; Uncharacterized protein
STRINGVIT_17s0000g06340.t011e-143(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-93AGAMOUS-like 65